First, I have already submitted a ticket for support, but I wanted to post it here as well in case someone else is having the same issue or has any insight into the cause.

I have tried 3 different scripts, each one I tried to install in the root directory of my control panel since that is where my domain points.

None of the scripts would work in the root.

As a test, I tried them all in subdirectories, and they all worked right away.

However, now in order to use the script I need, I have to use a url like domain.com/script, rendering my root directory useless to use.

I have never seen this before, has anyone else?